ComPairWise-package |
Compare phylogenetic or population genetic DNA/RNA alignments |
aln.to.matrix |
Convert an alignment to a taxa-by-characters matrix |
check.format |
Determine DNA/RNA alignment format |
ComPairWise |
Compare phylogenetic or population genetic DNA/RNA alignments |
cpw |
Compare alternate alignments of phylogenetic or population genetic data |
deinterleave |
Convert interleaved alignments to sequential |
dots.to.bases |
Convert alignment formats from dot-match to all bases |
endpoints |
Find the breakpoints between identical and different alignment columns |
long.string |
Make the +-o string |
matrix.to.aln |
Convert a data matrix to an alignment |
nexus.sets |
Create NEXUS sets block |
read.nexus |
Read a NEXUS-format character alignment |
read.phylip |
Read a PHYLIP-format character alignment |
sample.aln |
Sample DNA alignment |