Package AlignAce
source code
Parser and code for dealing with the standalone version of AlignAce, a
motif search program (DEPRECATED).
It also includes a very simple interface to CompareACE tool.
http://atlas.med.harvard.edu/
Now superseded by Bio.Motif
Class mapping: Bio.AlignAce.AlignAceStandalone ->
Bio.Motif.Applications.AlignAceCommandline
Bio.AlignAce.CompareAceStandalone ->
Bio.Motif.Applications.CompareAceCommandline Bio.Alignace.Motif ->
Bio.Motif.Motif Bio.AlignAce.Parser.CompareAceParser ->
Bio.Motif.CompareAceParser
Instead of using Bio.AlignAce.Parser.AlignAceParser class, you can use
Bio.Motif.parse(handle,format="AlignAce")
__warningregistry__
- Value:
{ ( ' Bio.AlignAce is deprecated. Please use Bio.Motif instead. ' ,
<type 'exceptions.DeprecationWarning'>,
26) : True}
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