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Definitions for interacting with BLAST related applications. Obsolete wrappers for the old/classic NCBI BLAST tools (written in C): - FastacmdCommandline - BlastallCommandline - BlastpgpCommandline - RpsBlastCommandline Wrappers for the new NCBI BLAST+ tools (written in C++): - NcbiblastpCommandline - Protein-Protein BLAST - NcbiblastnCommandline - Nucleotide-Nucleotide BLAST - NcbiblastxCommandline - Translated Query-Protein Subject BLAST - NcbitblastnCommandline - Protein Query-Translated Subject BLAST - NcbitblastxCommandline - Translated Query-Protein Subject BLAST - NcbipsiblastCommandline - Position-Specific Initiated BLAST - NcbirpsblastCommandline - Reverse Position Specific BLAST - NcbirpstblastnCommandline - Translated Reverse Position Specific BLAST
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FastacmdCommandline Create a commandline for the fasta program from NCBI (OBSOLETE). |
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_BlastCommandLine Base Commandline object for (classic) NCBI BLAST wrappers (PRIVATE). |
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_BlastAllOrPgpCommandLine Base Commandline object for NCBI BLAST wrappers (PRIVATE). |
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BlastallCommandline Create a commandline for the blastall program from NCBI (OBSOLETE). |
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BlastpgpCommandline Create a commandline for the blastpgp program from NCBI (OBSOLETE). |
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RpsBlastCommandline Create a commandline for the classic rpsblast program from NCBI (OBSOLETE). |
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_NcbiblastCommandline Base Commandline object for (classic) NCBI BLAST wrappers (PRIVATE). |
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_Ncbiblast2SeqCommandline Base Commandline object for (classic) NCBI BLAST wrappers (PRIVATE). |
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NcbiblastpCommandline Create a commandline for the NCBI BLAST+ program blastp (for proteins). |
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NcbiblastnCommandline Wrapper for the NCBI BLAST+ program blastn (for nucleotides). |
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NcbiblastxCommandline Wrapper for the NCBI BLAST+ program blastx (nucleotide query, protein database). |
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NcbitblastnCommandline Wrapper for the NCBI BLAST+ program tblastn. |
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NcbitblastxCommandline Wrapper for the NCBI BLAST+ program tblastx. |
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NcbipsiblastCommandline Wrapper for the NCBI BLAST+ program psiblast. |
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NcbirpsblastCommandline Wrapper for the NCBI BLAST+ program rpsblast. |
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NcbirpstblastnCommandline Wrapper for the NCBI BLAST+ program rpstblastn. |
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