Class NcbirpsblastCommandline
source code
object --+
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Application.AbstractCommandline --+
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_NcbiblastCommandline --+
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NcbirpsblastCommandline
Wrapper for the NCBI BLAST+ program rpsblast.
With the release of BLAST+ (BLAST rewritten in C++ instead of C), the
NCBI replaced the old rpsblast tool with a similar tool of the same name.
This wrapper replaces RpsBlastCommandline, the wrapper for the old
rpsblast.
>>> from Bio.Blast.Applications import NcbirpsblastCommandline
>>> cline = NcbirpsblastCommandline(help=True)
>>> cline
NcbirpsblastCommandline(cmd='rpsblast', help=True)
>>> print cline
rpsblast -help
You would typically run the command line with the Python subprocess
module, as described in the Biopython tutorial.
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__init__(self,
cmd=' rpsblast ' ,
**kwargs)
Create a new instance of a command line wrapper object. |
source code
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Inherited from Application.AbstractCommandline :
__repr__ ,
__setattr__ ,
__str__ ,
set_parameter
Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__sizeof__ ,
__subclasshook__
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Inherited from object :
__class__
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__init__(self,
cmd=' rpsblast ' ,
**kwargs)
(Constructor)
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Create a new instance of a command line wrapper object.
- Overrides:
object.__init__
- (inherited documentation)
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