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Identifier Index
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]
A
aa1
(in
Bio.PDB.Polypeptide
)
add_to_logodds()
(in
_MEMEConsumer
)
ambiguous_rna_by_name
(in
Bio.Translate
)
aa3
(in
Bio.PDB.Polypeptide
)
add_to_pssm()
(in
MEMEMotif
)
ambiguous_rna_complement
(in
Bio.Data.IUPACData
)
AanI
add_to_pssm()
(in
_MEMEConsumer
)
ambiguous_rna_letters
(in
Bio.Data.IUPACData
)
AarI
add_to_pssm()
(in
_MEMEConsumer
)
ambiguous_rna_values
(in
Bio.Data.IUPACData
)
AasI
add_track()
(in
Diagram
)
ambiguous_rna_weight_ranges
(in
Bio.Data.IUPACData
)
AatI
add_url()
(in
NetCatch
)
ambiguous_transcriber
(in
Bio.Transcribe
)
AatII
add_wgs_scafld()
(in
_FeatureConsumer
)
AmbiguousCodonTable
(in
Bio.Data.CodonTable
)
abs()
(in
FSSPAlignDict
)
add_wgs_scafld()
(in
_RecordConsumer
)
AmbiguousForwardTable
(in
Bio.Data.CodonTable
)
abs_res_num
(in
align
)
addRule()
(in
GenericParser
)
AmbiguousRepair
(in
Bio.GA.Repair.Stabilizing
)
AbsI
AdeI
Amplifier
(in
Bio.Emboss.PrimerSearch
)
absolute
(in
Bio.Affy.CelFile
)
af
(in
Bio.Sequencing.Ace
)
Analysis
AbsoluteLocation
(in
Bio.GenBank.LocationParser
)
AfaI
angle()
(in
Vector
)
Abstract
(in
Bio.GA.Selection
)
AfeI
angle2trig()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
AbstractAtomPropertyMap
(in
Bio.PDB.AbstractPropertyMap
)
affine_penalty
(in
Bio.pairwise2
)
annotate()
(in
Bio.PDB.PSEA
)
AbstractCommandline
(in
Bio.Application
)
Affy
(in
Bio
)
annotations
(in
DBSeqRecord
)
AbstractConsumer
(in
Bio.ParserSupport
)
AfiI
anticonsensus()
(in
Motif
)
AbstractCut
AflII
Antiparallel()
(in
Bio.Restriction._Update.RestrictionCompiler
)
AbstractDPAlgorithms
(in
Bio.HMM.DynamicProgramming
)
AflIII
Aor13HI
AbstractDrawer
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
AfterPosition
(in
Bio.SeqFeature
)
Aor51HI
AbstractLayer
(in
Bio.NeuralNetwork.BackPropagation.Layer
)
AgeI
ApaBI
AbstractParser
(in
Bio.ParserSupport
)
aggregate()
(in
FeatureQuery
)
ApaI
AbstractPosition
(in
Bio.SeqFeature
)
AgsI
ApaLI
AbstractPropertyMap
(in
Bio.PDB
)
AhaIII
ApeKI
AbstractPropertyMap
(in
Bio.PDB.AbstractPropertyMap
)
AhdI
ApoI
AbstractResiduePropertyMap
(in
Bio.PDB.AbstractPropertyMap
)
AhlI
append()
(in
Chain
)
AbstractSelection
(in
Bio.GA.Selection.Abstract
)
AjiI
append()
(in
SeqMap
)
AbstractTrainer
(in
Bio.HMM.Trainer
)
AjnI
append()
(in
MutableSeq
)
acc
(in
align
)
AjuI
append()
(in
Alignment
)
Acc16I
AleI
append()
(in
AlignmentColumn
)
Acc36I
AlfI
append_sets()
(in
Nexus
)
Acc65I
Algorithm
(in
Bio.Search
)
append_to()
(in
AppendableListDictionary
)
AccB1I
Align
(in
Bio
)
AppendableListDictionary
AccB7I
align
(in
Bio.FSSP.fssp_rec
)
Application
(in
Bio
)
AccBSI
align
(in
Bio.pairwise2
)
ApplicationResult
(in
Bio.Application
)
accept_atom()
(in
ChainSelector
)
align()
(in
_HSPConsumer
)
Applications
(in
Bio.Align
)
accept_atom()
(in
Select
)
align()
(in
Bio.Wise
)
Applications
(in
Bio.AlignAce
)
accept_chain()
(in
ChainSelector
)
align()
(in
Bio.Wise.dnal
)
Applications
(in
Bio.Blast
)
accept_chain()
(in
Select
)
align()
(in
Bio.Wise.psw
)
Applications
(in
Bio.Emboss
)
accept_model()
(in
ChainSelector
)
AlignAce
(in
Bio
)
Applications
(in
Bio.Motif
)
accept_model()
(in
Select
)
AlignAce
(in
Bio.Motif.Parsers
)
Applications
(in
Bio.Sequencing
)
accept_residue()
(in
ChainSelector
)
AlignAce()
(in
Bio.AlignAce.AlignAceStandalone
)
apply()
(in
Superimposer
)
accept_residue()
(in
Select
)
AlignAceCommandline
(in
Bio.AlignAce.Applications
)
apply_on_multi_fasta()
(in
Bio.SeqUtils
)
AcceptedReplacementsMatrix
(in
Bio.SubsMat
)
AlignAceCommandline
(in
Bio.Motif.Applications._AlignAce
)
approximate_fst()
(in
Bio.PopGen.FDist.Utils
)
accession()
(in
_FeatureConsumer
)
AlignAceConsumer
(in
Bio.AlignAce.Parser
)
ApyPI
accession()
(in
_RecordConsumer
)
AlignAceConsumer
(in
Bio.Motif.Parsers.AlignAce
)
AquII
accession()
(in
_RecordConsumer
)
AlignAceParser
(in
Bio.AlignAce.Parser
)
AquIII
accession()
(in
_RecordConsumer
)
AlignAceParser
(in
Bio.Motif.Parsers.AlignAce
)
AquIV
accession()
(in
_RecordConsumer
)
AlignAceScanner
(in
Bio.AlignAce.Scanner
)
arccos
(in
Bio.Affy.CelFile
)
accession()
(in
_SequenceConsumer
)
AlignAceScanner
(in
Bio.Motif.Parsers.AlignAce
)
arccosh
(in
Bio.Affy.CelFile
)
AccI
AlignAceStandalone
(in
Bio.AlignAce
)
arcsin
(in
Bio.Affy.CelFile
)
AccII
AlignInfo
(in
Bio.Align
)
arcsinh
(in
Bio.Affy.CelFile
)
AccIII
AlignIO
(in
Bio
)
arctan
(in
Bio.Affy.CelFile
)
ACCREP
(in
Bio.SubsMat
)
Alignment
(in
Bio.Align.Generic
)
arctan2
(in
Bio.Affy.CelFile
)
Ace
(in
Bio.Sequencing
)
Alignment
(in
Bio.Blast.Record
)
arctanh
(in
Bio.Affy.CelFile
)
AceDict
(in
Bio.SeqIO._index
)
Alignment
(in
Bio.Wise.psw
)
ArgsParser
ACEFileRecord
(in
Bio.Sequencing.Ace
)
AlignmentColumn
(in
Bio.Wise.psw
)
aromaticity()
(in
ProteinAnalysis
)
AceIII
AlignmentColumnFullException
(in
Bio.Wise.psw
)
ArsI
AceIO
(in
Bio.SeqIO
)
AlignmentHasDifferentLengthsError
(in
Bio.CAPS
)
artemis_color()
(in
ColorTranslator
)
AceIterator()
(in
Bio.SeqIO.AceIO
)
AlignmentIterator
(in
Bio.AlignIO.Interfaces
)
as_string()
(in
RestrictionBatch
)
AciI
alignments_rec
(in
Bio.FSSP
)
AscI
AclI
alignments_title
(in
Bio.FSSP
)
asdict()
(in
Bio.listfns
)
AclWI
AlignmentWriter
(in
Bio.AlignIO.Interfaces
)
AseI
AcoI
all_get_indices()
(in
KDTree
)
Asi256I
acquire()
(in
SplitFDist
)
all_get_radii()
(in
KDTree
)
AsiGI
AcsI
all_ids()
(in
Chain
)
AsiSI
AcuI
all_letters_sum()
(in
SeqMat
)
Asp700I
AcvI
all_pairs()
(in
Bio.Wise
)
Asp718I
AcyI
all_search()
(in
KDTree
)
AspA2I
Adaptor
(in
BioSQL.BioSeqDatabase
)
all_suppliers()
(in
AbstractCut
)
AspCNI
add
(in
Bio.Affy.CelFile
)
all_unambiguous()
(in
Schema
)
AspEI
add()
(in
Location
)
AllEnzymes
(in
Bio.Restriction
)
AspI
add()
(in
_ChromosomeComponent
)
AllEnzymes
(in
Bio.Restriction.Restriction
)
AspLEI
add()
(in
StepMatrix
)
AllEnzymes
(in
Bio.Restriction._Update.RestrictionCompiler
)
AspS9I
add()
(in
Chain
)
allow_all_transitions()
(in
MarkovModelBuilder
)
AssI
add()
(in
Entity
)
ALLOW_THREADS
(in
Bio.Affy.CelFile
)
Astral
(in
Bio.SCOP
)
add()
(in
DisorderedResidue
)
allow_transition()
(in
MarkovModelBuilder
)
astralBibIds
(in
Bio.SCOP
)
add()
(in
Residue
)
AloI
astralEv_to_file
(in
Bio.SCOP
)
add()
(in
HashSet
)
Alphabet
(in
Bio
)
astralEv_to_sql
(in
Bio.SCOP
)
add()
(in
RestrictionBatch
)
Alphabet
(in
Bio.Alphabet
)
astralEvs
(in
Bio.SCOP
)
add_align_list()
(in
FSSPAlignRec
)
alphabet
(in
Prosite
)
AsuC2I
add_count()
(in
ChromosomeCounts
)
alphabet_matches
(in
SchemaDNAAlphabet
)
AsuHPI
add_edge()
(in
Graph
)
AlphabetEncoder
(in
Bio.Alphabet
)
AsuI
add_edge()
(in
MultiGraph
)
alternate_name()
(in
_RecordConsumer
)
AsuII
add_entry()
(in
BlastTableRec
)
alternative_download_url
(in
PDBList
)
AsuNHI
add_examples()
(in
ExampleManager
)
AluBI
Async
(in
Bio.PopGen
)
add_feature()
(in
FeatureSet
)
AluI
Async
(in
Bio.PopGen.Async
)
add_instance()
(in
Motif
)
Alw21I
Async
(in
Bio.PopGen.FDist
)
add_instance()
(in
Motif
)
Alw26I
Async
(in
Bio.PopGen.SimCoal
)
add_instance()
(in
_MEMEConsumer
)
Alw44I
Atom
(in
Bio.PDB
)
add_instance()
(in
_MEMEConsumer
)
AlwFI
Atom
(in
Bio.PDB.Atom
)
add_instance()
(in
Motif
)
AlwI
attempt_read_and_call()
(in
Bio.ParserSupport
)
add_instance_from_values()
(in
MEMEMotif
)
AlwNI
augment()
(in
GenericParser
)
add_instance_from_values()
(in
MEMEMotif
)
Ama87I
authors()
(in
_FeatureConsumer
)
add_interaction()
(in
Network
)
ambiguity()
(in
GenericParser
)
authors()
(in
_RecordConsumer
)
add_label()
(in
ChromosomeCounts
)
Ambiguous
autocommit()
(in
Adaptor
)
add_nocheck()
(in
RestrictionBatch
)
ambiguous_dna
(in
Bio.Alphabet.IUPAC
)
autocommit()
(in
Generic_dbutils
)
add_node()
(in
Graph
)
ambiguous_dna_by_id
(in
Bio.Data.CodonTable
)
autocommit()
(in
Pgdb_dbutils
)
add_node()
(in
MultiGraph
)
ambiguous_dna_by_id
(in
Bio.Translate
)
autocommit()
(in
Psycopg2_dbutils
)
add_point()
(in
GraphData
)
ambiguous_dna_by_name
(in
Bio.Data.CodonTable
)
autocommit()
(in
Psycopg_dbutils
)
add_primer_set()
(in
InputRecord
)
ambiguous_dna_by_name
(in
Bio.Translate
)
AvaI
add_reaction()
(in
System
)
ambiguous_dna_complement
(in
Bio.Data.IUPACData
)
AvaII
add_residue()
(in
Fragment
)
ambiguous_dna_letters
(in
Bio.Data.IUPACData
)
AvaIII
add_sequence()
(in
Alignment
)
ambiguous_dna_values
(in
Bio.Data.IUPACData
)
available_matrices
(in
Bio.SubsMat.MatrixInfo
)
add_sequence()
(in
Nexus
)
ambiguous_dna_weight_ranges
(in
Bio.Data.IUPACData
)
available_results()
(in
ApplicationResult
)
add_set()
(in
Track
)
ambiguous_generic_by_id
(in
Bio.Data.CodonTable
)
avg_ambiguous_dna_weights
(in
Bio.Data.IUPACData
)
add_species()
(in
Network
)
ambiguous_generic_by_name
(in
Bio.Data.CodonTable
)
avg_ambiguous_rna_weights
(in
Bio.Data.IUPACData
)
add_succ()
(in
Node
)
ambiguous_rna
(in
Bio.Alphabet.IUPAC
)
avg_extended_protein_weights
(in
Bio.Data.IUPACData
)
add_supplier()
(in
RestrictionBatch
)
ambiguous_rna_by_id
(in
Bio.Data.CodonTable
)
AviII
add_to_logodds()
(in
MEMEMotif
)
ambiguous_rna_by_id
(in
Bio.Translate
)
AvrII
add_to_logodds()
(in
_MEMEConsumer
)
ambiguous_rna_by_name
(in
Bio.Data.CodonTable
)
AxyI
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