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Codon tables based on those from the NCBI.
These tables are based on parsing the NCBI file: ftp://ftp.ncbi.nih.gov/entrez/misc/data/gc.prt
Last updated for Version 3.9
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TranslationError | |||
CodonTable | |||
NCBICodonTable | |||
NCBICodonTableDNA | |||
NCBICodonTableRNA | |||
AmbiguousCodonTable | |||
AmbiguousForwardTable |
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unambiguous_dna_by_name = {}
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unambiguous_dna_by_id = {}
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unambiguous_rna_by_name = {}
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unambiguous_rna_by_id = {}
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generic_by_name = {}
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generic_by_id = {}
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ambiguous_generic_by_name =
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ambiguous_generic_by_id = {}
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standard_dna_table = None
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standard_rna_table = None
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ambiguous_dna_by_name = {}
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ambiguous_dna_by_id = {}
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ambiguous_rna_by_name = {}
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ambiguous_rna_by_id = {}
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__package__ =
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Extends a codon list to include all possible ambigous codons. e.g. ['TAG', 'TAA'] -> ['TAG', 'TAA', 'TAR'] ['UAG', 'UGA'] -> ['UAG', 'UGA', 'URA'] Note that ['TAG', 'TGA'] -> ['TAG', 'TGA'], this does not add 'TRR'. Thus only two more codons are added in the following: e.g. ['TGA', 'TAA', 'TAG'] -> ['TGA', 'TAA', 'TAG', 'TRA', 'TAR'] Returns a new (longer) list of codon strings. |
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ambiguous_generic_by_name
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Generated by Epydoc 3.0.1 on Wed Dec 16 11:25:16 2009 | http://epydoc.sourceforge.net |