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Identifier Index
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T
T
ThreeLetterProtein
(in
Bio.Alphabet
)
Transcribe
(in
Bio
)
t_caret()
(in
LocationScanner
)
threshold()
(in
_ParametersConsumer
)
Transcribe
(in
Bio.Transcribe
)
t_close_paren()
(in
LocationScanner
)
threshold()
(in
_Consumer
)
transcribe()
(in
Seq
)
t_colon()
(in
LocationScanner
)
threshold_balanced()
(in
ScoreDistribution
)
transcribe()
(in
UnknownSeq
)
t_comma()
(in
LocationScanner
)
threshold_fnr()
(in
ScoreDistribution
)
transcribe()
(in
Bio.Seq
)
t_default()
(in
GenericScanner
)
threshold_fpr()
(in
ScoreDistribution
)
transcribe()
(in
Transcribe
)
t_dot()
(in
LocationScanner
)
threshold_patser()
(in
ScoreDistribution
)
transform()
(in
Atom
)
t_double_colon()
(in
LocationScanner
)
Thresholds
(in
Bio.Motif
)
transformation()
(in
StepMatrix
)
t_double_dot()
(in
LocationScanner
)
title()
(in
_AlignmentConsumer
)
transitions_from()
(in
HiddenMarkovModel
)
t_greater_than()
(in
LocationScanner
)
title()
(in
_FeatureConsumer
)
Translate
(in
Bio
)
t_integer()
(in
LocationScanner
)
title()
(in
_RecordConsumer
)
translate()
(in
Feature
)
t_less_than()
(in
LocationScanner
)
TITLE()
(in
_RecordConsumer
)
translate()
(in
FeatureAggregate
)
t_open_paren()
(in
LocationScanner
)
TliI
translate()
(in
ColorTranslator
)
t_symbol()
(in
LocationScanner
)
Tm_staluc()
(in
Bio.SeqUtils.MeltingTemp
)
translate()
(in
Seq
)
t_unsigned_integer()
(in
LocationScanner
)
tname()
(in
Generic_dbutils
)
translate()
(in
UnknownSeq
)
TaaI
to_alignment()
(in
Bio.SeqIO
)
translate()
(in
Bio.Seq
)
TabDict
(in
Bio.SeqIO._index
)
to_circular()
(in
FormattedSeq
)
translate()
(in
Translator
)
TabIO
(in
Bio.SeqIO
)
to_clustal()
(in
FormatConverter
)
translate_to_stop()
(in
Translator
)
TabIterator()
(in
Bio.SeqIO.TabIO
)
to_dict()
(in
Bio.SeqIO
)
TranslationError
(in
Bio.Data.CodonTable
)
TableInfo
(in
Bio.Search
)
to_fasta()
(in
FormatConverter
)
Translator
(in
Bio.Translate
)
TabWriter
(in
Bio.SeqIO.TabIO
)
to_fasta()
(in
Motif
)
Tree
(in
Bio.Nexus.Trees
)
TaggingConsumer
(in
Bio.ParserSupport
)
to_generic()
(in
MultipleAlignment
)
treecluster()
(in
Record
)
TaiI
to_linear()
(in
FormattedSeq
)
TreeError
(in
Bio.Nexus.Trees
)
take()
(in
Bio.listfns
)
to_one_letter_code
(in
Bio.PDB.DSSP'
)
Trees
(in
Bio.Nexus
)
take_byfn()
(in
Bio.listfns
)
to_one_letter_code
(in
Bio.PDB.FragmentMapper'
)
triefind
(in
Bio
)
tan
(in
Bio.Affy.CelFile
)
to_one_letter_code
(in
Bio.PDB.HSExposure
)
Tru1I
tanh
(in
Bio.Affy.CelFile
)
to_one_letter_code
(in
Bio.PDB.PSEA
)
Tru9I
TaqI
to_one_letter_code
(in
Bio.PDB.ResidueDepth'
)
True_
(in
Bio.Affy.CelFile
)
TaqII
to_one_letter_code
(in
Bio.PDB.StructureAlignment'
)
true_divide
(in
Bio.Affy.CelFile
)
target_location()
(in
Feature
)
to_one_letter_code
(in
Bio.SCOP.Raf
)
trunc
(in
Bio.Affy.CelFile
)
TatI
to_string()
(in
FeatureSet
)
TscAI
TauI
to_string()
(in
GraphSet
)
TseI
taxonomy()
(in
_FeatureConsumer
)
to_string()
(in
Track
)
TsoI
taxonomy()
(in
_RecordConsumer
)
to_string()
(in
Tree
)
Tsp45I
taxonomy_id()
(in
_RecordConsumer
)
toClaRecord()
(in
Domain
)
Tsp4CI
taxonomy_id()
(in
_SequenceConsumer
)
toDesRecord()
(in
Domain
)
Tsp509I
TAXSET
(in
Bio.Nexus.Nexus
)
toDesRecord()
(in
Node
)
TspDTI
TCoffeeCommandline
(in
Bio.Align.Applications._TCoffee
)
toHieRecord()
(in
Node
)
TspEI
tell()
(in
UndoHandle
)
Token
(in
Bio.GenBank.LocationParser
)
TspGWI
TelomereSegment
(in
Bio.Graphics.BasicChromosome
)
tokenize()
(in
LocationScanner
)
TspMI
TempFile
tokenize()
(in
GenericScanner
)
TspRI
Template
(in
Bio.PopGen.SimCoal
)
tomutable()
(in
Seq
)
TssI
terminal()
(in
GenericASTBuilder
)
toseq()
(in
MutableSeq
)
TstI
terminal_gap_to_missing()
(in
Nexus
)
toseq()
(in
DBSeq
)
TsuI
terminator()
(in
_RecordConsumer
)
tostring()
(in
Crystal
)
Tth111I
terminator()
(in
_RecordConsumer
)
tostring()
(in
Prosite
)
Tth111II
terminator()
(in
_RecordConsumer
)
tostring()
(in
MutableSeq
)
turn3
(in
align
)
test_genic_diff_all()
(in
GenePopController
)
tostring()
(in
Seq
)
turn4
(in
align
)
test_genic_diff_pair()
(in
GenePopController
)
tostring()
(in
DBSeq
)
turn5
(in
align
)
test_genotypic_diff_all()
(in
GenePopController
)
total_weight()
(in
Bio.utils
)
two_mat_correlation()
(in
Bio.SubsMat
)
test_genotypic_diff_pair()
(in
GenePopController
)
total_weight_range()
(in
Bio.utils
)
two_mat_DJS()
(in
Bio.SubsMat
)
test_global_hz_deficiency()
(in
GenePopController
)
Tournament
(in
Bio.GA.Selection
)
two_mat_relative_entropy()
(in
Bio.SubsMat
)
test_global_hz_excess()
(in
GenePopController
)
TournamentSelection
(in
Bio.GA.Selection.Tournament
)
TwoBound
(in
Bio.GenBank.LocationParser
)
test_hw_global()
(in
EasyController
)
trace()
(in
Chain
)
TwoCrossover
(in
Bio.GA.Crossover.GeneralPoint
)
test_hw_pop()
(in
EasyController
)
Track
(in
Bio.Graphics.GenomeDiagram._Track
)
TwoCuts
test_ld()
(in
GenePopController
)
train()
(in
BaumWelchTrainer
)
TwoPoint
(in
Bio.GA.Crossover
)
test_ld_all_pair()
(in
EasyController
)
train()
(in
KnownStateTrainer
)
TwoPointCrossover
(in
Bio.GA.Crossover.TwoPoint
)
test_path
(in
Bio.PopGen.SimCoal
)
train()
(in
Bio.LogisticRegression
)
type
(in
Integer
)
test_pop_hw_prob()
(in
GenePopController
)
train()
(in
Bio.MaxEntropy
)
type
(in
Symbol
)
test_pop_hz_deficiency()
(in
GenePopController
)
train()
(in
Bio.NaiveBayes
)
type
(in
UnsignedInteger
)
test_pop_hz_excess()
(in
GenePopController
)
train()
(in
BasicNetwork
)
typecodes
(in
Bio.Affy.CelFile
)
text()
(in
_RecordConsumer
)
train()
(in
Bio.kNN
)
TypeCompiler
(in
Bio.Restriction._Update.RestrictionCompiler
)
TfiI
train_bw()
(in
Bio.MarkovModel
)
typeDict
(in
Bio.Affy.CelFile
)
this_module
(in
Bio.MarkovModel
)
train_visible()
(in
Bio.MarkovModel
)
typedict
(in
Bio.Restriction.Restriction
)
this_module
(in
Bio.pairwise2
)
Trainer
(in
Bio.HMM
)
typedict
(in
Bio.Restriction.Restriction_Dictionary
)
three_prime()
(in
Location
)
Training
(in
Bio.NeuralNetwork
)
typedict
(in
Bio.Restriction._Update.RestrictionCompiler
)
three_prime_range()
(in
Location
)
TrainingExample
(in
Bio.NeuralNetwork.Training
)
typeNA
(in
Bio.Affy.CelFile
)
three_to_index()
(in
Bio.PDB.Polypeptide
)
TrainingSequence
(in
Bio.HMM.Trainer
)
typestring()
(in
GenericASTTraversal
)
three_to_one()
(in
Bio.PDB.Polypeptide
)
TranalignCommandline
(in
Bio.Emboss.Applications
)
typestring()
(in
GenericParser
)
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