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AlphabetEncoder --+ | HasStopCodon
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Does this alphabet 'contain' the other (OBSOLETE?). Returns a boolean. This relies on the Alphabet subclassing hierarchy, and attempts to check the stop symbol. This fails if the other alphabet does not have a stop symbol!
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Return an upper case variant of the current alphabet (PRIVATE).
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Return a lower case variant of the current alphabet (PRIVATE).
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