perl-Bio-DB-NCBIHelper-1.7.6-2.mga8 RPM for noarch

From Mageia 8 for x86_64 / media / core / release

Allows the dynamic retrieval of the Bio::Seq manpage sequence objects from
the GenBank database at NCBI, via an Entrez query.

WARNING: Please do *NOT* spam the Entrez web server with multiple requests.
NCBI offers Batch Entrez for this purpose.

Note that when querying for GenBank accessions starting with 'NT_' you will
need to call $gb->request_format('fasta') beforehand, because in GenBank
format (the default) the sequence part will be left out (the reason is that
NT contigs are rather annotation with references to clones).

Provides

• perl-Bio-DB-NCBIHelper
• perl(Bio::DB::EntrezGene)
• perl(Bio::DB::GenBank)
• perl(Bio::DB::GenPept)
• perl(Bio::DB::NCBIHelper)
• perl(Bio::DB::Query::GenBank)
• perl(Bio::DB::Taxonomy::entrez)

Requires

• perl(Bio::DB::GenBank)
• perl(Bio::DB::GenPept)
• perl(Bio::DB::NCBIHelper)
• perl(Bio::DB::Query::GenBank)
• perl(Bio::DB::Query::WebQuery)
• perl(Bio::DB::Taxonomy)
• perl(Bio::DB::WebDBSeqI)
• perl(Bio::Root::IO)
• perl(Bio::Root::Root)
• perl(Bio::SeqIO)
• perl(Bio::SeqIO::entrezgene)
• perl(Bio::Taxon)
• perl(Bio::WebAgent)
• perl(CGI)
• perl(Cache::FileCache)
• perl(Getopt::Long)
• perl(HTTP::Request::Common)
• perl(LWP::Protocol::https)
• perl(LWP::UserAgent)
• perl(URI)
• perl(URI::Escape)
• perl(XML::Twig)
• perl(base)
• perl(constant)
• perl(strict)
• perl(vars)
• perl(warnings)
• perl-base >= 2:5.30.1
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1

License

GPLv1+ or Artistic

Changelog

* Tue Feb 18 2020 umeabot <umeabot> 1.7.6-2.mga8
  + Revision: 1539618
  - Mageia 8 Mass Rebuild
* Mon Dec 09 2019 tv <tv> 1.7.6-1.mga8
  + Revision: 1465380
  - do not run tests that need internet access
  - imported package perl-Bio-DB-NCBIHelper
* Mon Dec 09 2019 Thierry Vignaud <tv@mageia.org> 1.7.6-1.mga8
  - initial mageia release, generated with cpan2dist

Files

/usr/bin/bp_biofetch_genbank_proxy
/usr/bin/bp_download_query_genbank
/usr/bin/bp_query_entrez_taxa
/usr/share/doc/perl-Bio-DB-NCBIHelper
/usr/share/doc/perl-Bio-DB-NCBIHelper/Changes
/usr/share/doc/perl-Bio-DB-NCBIHelper/LICENSE
/usr/share/doc/perl-Bio-DB-NCBIHelper/META.json
/usr/share/doc/perl-Bio-DB-NCBIHelper/META.yml
/usr/share/doc/perl-Bio-DB-NCBIHelper/eg
/usr/share/doc/perl-Bio-DB-NCBIHelper/eg/gb2features.pl
/usr/share/doc/perl-Bio-DB-NCBIHelper/eg/getGenBank.pl
/usr/share/doc/perl-Bio-DB-NCBIHelper/eg/subsequence.cgi
/usr/share/man/man1/bp_biofetch_genbank_proxy.1.xz
/usr/share/man/man1/bp_download_query_genbank.1.xz
/usr/share/man/man1/bp_query_entrez_taxa.1.xz
/usr/share/man/man3/Bio::DB::EntrezGene.3pm.xz
/usr/share/man/man3/Bio::DB::GenBank.3pm.xz
/usr/share/man/man3/Bio::DB::GenPept.3pm.xz
/usr/share/man/man3/Bio::DB::NCBIHelper.3pm.xz
/usr/share/man/man3/Bio::DB::Query::GenBank.3pm.xz
/usr/share/man/man3/Bio::DB::Taxonomy::entrez.3pm.xz
/usr/share/perl5/vendor_perl/Bio
/usr/share/perl5/vendor_perl/Bio/DB
/usr/share/perl5/vendor_perl/Bio/DB/EntrezGene.pm
/usr/share/perl5/vendor_perl/Bio/DB/GenBank.pm
/usr/share/perl5/vendor_perl/Bio/DB/GenPept.pm
/usr/share/perl5/vendor_perl/Bio/DB/NCBIHelper.pm
/usr/share/perl5/vendor_perl/Bio/DB/Query
/usr/share/perl5/vendor_perl/Bio/DB/Query/GenBank.pm
/usr/share/perl5/vendor_perl/Bio/DB/Taxonomy
/usr/share/perl5/vendor_perl/Bio/DB/Taxonomy/entrez.pm

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Fabrice Bellet, Tue Apr 9 15:38:33 2024