43 #ifndef PANZER_STK_MODEL_EVALUATOR_FACTORY_T_HPP 44 #define PANZER_STK_MODEL_EVALUATOR_FACTORY_T_HPP 46 #include "Thyra_ModelEvaluator.hpp" 47 #include "Teuchos_Assert.hpp" 48 #include "Teuchos_as.hpp" 49 #include "Teuchos_DefaultMpiComm.hpp" 50 #include "Teuchos_AbstractFactoryStd.hpp" 52 #include "PanzerAdaptersSTK_config.hpp" 63 #include "Panzer_TpetraLinearObjFactory.hpp" 105 #include "Thyra_EpetraModelEvaluator.hpp" 106 #include "Piro_ConfigDefs.hpp" 107 #include "Piro_NOXSolver.hpp" 108 #include "Piro_LOCASolver.hpp" 109 #include "Piro_RythmosSolver.hpp" 115 template<
typename ScalarT>
118 paramList->validateParametersAndSetDefaults(*this->getValidParameters());
122 if(!paramList->sublist(
"Initial Conditions").isType<
bool>(
"Zero Initial Conditions"))
123 paramList->sublist(
"Initial Conditions").set<
bool>(
"Zero Initial Conditions",
false);
125 paramList->sublist(
"Initial Conditions").sublist(
"Vector File").validateParametersAndSetDefaults(
126 getValidParameters()->sublist(
"Initial Conditions").sublist(
"Vector File"));
128 this->setMyParamList(paramList);
131 template<
typename ScalarT>
134 static Teuchos::RCP<const Teuchos::ParameterList> validPL;
135 if (is_null(validPL)) {
136 Teuchos::RCP<Teuchos::ParameterList> pl = Teuchos::rcp(
new Teuchos::ParameterList());
138 pl->sublist(
"Physics Blocks").disableRecursiveValidation();
139 pl->sublist(
"Closure Models").disableRecursiveValidation();
140 pl->sublist(
"Boundary Conditions").disableRecursiveValidation();
141 pl->sublist(
"Solution Control").disableRecursiveValidation();
142 pl->set<
bool>(
"Use Discrete Adjoint",
false);
144 pl->sublist(
"Mesh").disableRecursiveValidation();
146 pl->sublist(
"Initial Conditions").set<
bool>(
"Zero Initial Conditions",
false);
147 pl->sublist(
"Initial Conditions").sublist(
"Transient Parameters").disableRecursiveValidation();
148 pl->sublist(
"Initial Conditions").sublist(
"Vector File");
149 pl->sublist(
"Initial Conditions").sublist(
"Vector File").set(
"File Name",
"");
150 pl->sublist(
"Initial Conditions").sublist(
"Vector File").set<
bool>(
"Enabled",
false);
151 pl->sublist(
"Initial Conditions").disableRecursiveValidation();
153 pl->sublist(
"Output").set(
"File Name",
"panzer.exo");
154 pl->sublist(
"Output").set(
"Write to Exodus",
true);
155 pl->sublist(
"Output").sublist(
"Cell Average Quantities").disableRecursiveValidation();
156 pl->sublist(
"Output").sublist(
"Cell Quantities").disableRecursiveValidation();
157 pl->sublist(
"Output").sublist(
"Cell Average Vectors").disableRecursiveValidation();
158 pl->sublist(
"Output").sublist(
"Nodal Quantities").disableRecursiveValidation();
159 pl->sublist(
"Output").sublist(
"Allocate Nodal Quantities").disableRecursiveValidation();
163 Teuchos::ParameterList& p = pl->sublist(
"Assembly");
164 p.set<
int>(
"Workset Size", 1);
165 p.set<
int>(
"Default Integration Order",-1);
166 p.set<std::string>(
"Field Order",
"");
167 p.set<std::string>(
"Auxiliary Field Order",
"");
168 p.set<
bool>(
"Use DOFManager FEI",
false);
169 p.set<
bool>(
"Load Balance DOFs",
false);
170 p.set<
bool>(
"Use Tpetra",
false);
171 p.set<
bool>(
"Use Epetra ME",
true);
172 p.set<
bool>(
"Lump Explicit Mass",
false);
173 p.set<
bool>(
"Constant Mass Matrix",
true);
174 p.set<
bool>(
"Apply Mass Matrix Inverse in Explicit Evaluator",
true);
175 p.set<
bool>(
"Use Conservative IMEX",
false);
176 p.set<
bool>(
"Compute Real Time Derivative",
false);
177 p.set<
bool>(
"Use Time Derivative in Explicit Model",
false);
178 p.set<
bool>(
"Compute Time Derivative at Time Step",
false);
179 p.set<Teuchos::RCP<const panzer::EquationSetFactory> >(
"Equation Set Factory", Teuchos::null);
180 p.set<Teuchos::RCP<const panzer::ClosureModelFactory_TemplateManager<panzer::Traits> > >(
"Closure Model Factory", Teuchos::null);
181 p.set<Teuchos::RCP<const panzer::BCStrategyFactory> >(
"BC Factory",Teuchos::null);
182 p.set<std::string>(
"Excluded Blocks",
"");
183 p.sublist(
"ALE").disableRecursiveValidation();
186 pl->sublist(
"Block ID to Physics ID Mapping").disableRecursiveValidation();
187 pl->sublist(
"Options").disableRecursiveValidation();
188 pl->sublist(
"Active Parameters").disableRecursiveValidation();
189 pl->sublist(
"Controls").disableRecursiveValidation();
190 pl->sublist(
"ALE").disableRecursiveValidation();
191 pl->sublist(
"User Data").disableRecursiveValidation();
192 pl->sublist(
"User Data").sublist(
"Panzer Data").disableRecursiveValidation();
200 bool hasInterfaceCondition(
const std::vector<panzer::BC>& bcs)
202 for (std::vector<panzer::BC>::const_iterator bcit = bcs.begin(); bcit != bcs.end(); ++bcit)
208 Teuchos::RCP<STKConnManager>
209 getSTKConnManager(
const Teuchos::RCP<panzer::ConnManager>& conn_mgr)
211 const Teuchos::RCP<STKConnManager> stk_conn_mgr =
212 Teuchos::rcp_dynamic_cast<STKConnManager>(conn_mgr);
213 TEUCHOS_TEST_FOR_EXCEPTION(stk_conn_mgr.is_null(), std::logic_error,
214 "There are interface conditions, but the connection manager" 215 " does not support the necessary connections.");
219 void buildInterfaceConnections(
const std::vector<panzer::BC>& bcs,
220 const Teuchos::RCP<panzer::ConnManager>& conn_mgr)
222 const Teuchos::RCP<STKConnManager> stk_conn_mgr = getSTKConnManager(conn_mgr);
223 for (std::vector<panzer::BC>::const_iterator bcit = bcs.begin(); bcit != bcs.end(); ++bcit)
225 stk_conn_mgr->associateElementsInSideset(bcit->sidesetID());
228 void checkInterfaceConnections(
const Teuchos::RCP<panzer::ConnManager>& conn_mgr,
229 const Teuchos::RCP<Teuchos::Comm<int> >& comm)
231 const Teuchos::RCP<STKConnManager> stk_conn_mgr = getSTKConnManager(conn_mgr);
232 std::vector<std::string> sidesets = stk_conn_mgr->checkAssociateElementsInSidesets(*comm);
233 if ( ! sidesets.empty()) {
234 std::stringstream ss;
236 for (std::size_t i = 0; i < sidesets.size(); ++i)
237 ss <<
" " << sidesets[i];
238 ss <<
" did not yield associations, but these sidesets correspond to BCT_Interface BCs.";
239 TEUCHOS_TEST_FOR_EXCEPTION(
true, std::logic_error, ss.str());
244 template<
typename ScalarT>
246 const Teuchos::RCP<panzer::GlobalData>& global_data,
247 const Teuchos::RCP<const panzer::EquationSetFactory>& eqset_factory,
250 bool meConstructionOn)
252 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(this->getParameterList()), std::runtime_error,
253 "ParameterList must be set before objects can be built!");
255 TEUCHOS_ASSERT(nonnull(comm));
256 TEUCHOS_ASSERT(nonnull(global_data));
257 TEUCHOS_ASSERT(nonnull(global_data->os));
258 TEUCHOS_ASSERT(nonnull(global_data->pl));
261 m_global_data = global_data;
273 Teuchos::ParameterList& p = *this->getNonconstParameterList();
276 Teuchos::ParameterList & mesh_params = p.sublist(
"Mesh");
277 Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
278 Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
279 Teuchos::ParameterList & output_list = p.sublist(
"Output");
281 Teuchos::ParameterList & user_data_params = p.sublist(
"User Data");
282 Teuchos::ParameterList & panzer_data_params = user_data_params.sublist(
"Panzer Data");
284 Teuchos::RCP<Teuchos::ParameterList> physics_block_plist = Teuchos::sublist(this->getMyNonconstParamList(),
"Physics Blocks");
287 std::size_t workset_size = Teuchos::as<std::size_t>(assembly_params.get<
int>(
"Workset Size"));
288 std::string field_order = assembly_params.get<std::string>(
"Field Order");
290 bool use_dofmanager_fei = assembly_params.get<
bool>(
"Use DOFManager FEI");
291 bool use_load_balance = assembly_params.get<
bool>(
"Load Balance DOFs");
292 bool useTpetra = assembly_params.get<
bool>(
"Use Tpetra");
293 bool useThyraME = !assembly_params.get<
bool>(
"Use Epetra ME");
297 bool is_transient = solncntl_params.get<std::string>(
"Piro Solver") ==
"Rythmos" ?
true :
false;
299 if (solncntl_params.get<std::string>(
"Piro Solver") ==
"NOX") {
300 if (solncntl_params.sublist(
"NOX").get<std::string>(
"Nonlinear Solver") ==
"Pseudo-Transient")
305 if (solncntl_params.get<std::string>(
"Piro Solver") ==
"LOCA") {
306 if (solncntl_params.sublist(
"LOCA").sublist(
"Stepper").get<
bool>(
"Compute Eigenvalues"))
309 m_is_transient = is_transient;
311 useDiscreteAdjoint = p.get<
bool>(
"Use Discrete Adjoint");
319 Teuchos::FancyOStream& fout = *global_data->os;
322 const Teuchos::RCP<const Teuchos::MpiComm<int> > mpi_comm =
328 Teuchos::RCP<panzer_stk::STK_MeshFactory> mesh_factory = this->buildSTKMeshFactory(mesh_params);
329 Teuchos::RCP<panzer_stk::STK_Interface> mesh = mesh_factory->buildUncommitedMesh(*(mpi_comm->getRawMpiComm()));
332 m_eqset_factory = eqset_factory;
337 std::vector<Teuchos::RCP<panzer::PhysicsBlock> > physicsBlocks;
340 std::map<std::string,std::string> block_ids_to_physics_ids;
344 std::map<std::string,Teuchos::RCP<const shards::CellTopology> > block_ids_to_cell_topo;
345 for(std::map<std::string,std::string>::const_iterator itr=block_ids_to_physics_ids.begin();
346 itr!=block_ids_to_physics_ids.end();++itr) {
347 block_ids_to_cell_topo[itr->first] = mesh->getCellTopology(itr->first);
348 TEUCHOS_ASSERT(block_ids_to_cell_topo[itr->first]!=Teuchos::null);
353 panzer::buildPhysicsBlocks(block_ids_to_physics_ids,
354 block_ids_to_cell_topo,
356 assembly_params.get<
int>(
"Default Integration Order"),
362 m_physics_blocks = physicsBlocks;
367 addUserFieldsToMesh(*mesh,output_list);
374 this->finalizeMeshConstruction(*mesh_factory,physicsBlocks,*mpi_comm,*mesh);
376 fout <<
"*****************************************\n\n";
377 fout <<
"Element block exception, could not finalize the mesh, printing block and sideset information:\n";
379 mesh->printMetaData(fout);
385 fout <<
"*****************************************\n\n";
386 fout <<
"Sideset exception, could not finalize the mesh, printing block and sideset information:\n";
388 mesh->printMetaData(fout);
396 if(p.sublist(
"Output").get<
bool>(
"Write to Exodus"))
397 mesh->setupExodusFile(p.sublist(
"Output").get<std::string>(
"File Name"));
401 Teuchos::RCP<panzer_stk::WorksetFactory> wkstFactory;
402 if(m_user_wkst_factory==Teuchos::null)
405 wkstFactory = m_user_wkst_factory;
408 wkstFactory->setMesh(mesh);
412 std::vector<panzer::BC> bcs;
413 panzer::buildBCs(bcs, p.sublist(
"Boundary Conditions"), global_data);
418 m_conn_manager = conn_manager;
423 Teuchos::RCP<panzer::LinearObjFactory<panzer::Traits> > linObjFactory;
424 Teuchos::RCP<panzer::GlobalIndexer> globalIndexer;
426 std::string loadBalanceString =
"";
427 bool blockedAssembly =
false;
432 blockedAssembly =
true;
437 Teuchos::RCP<panzer::GlobalIndexer> dofManager
438 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,field_order);
439 globalIndexer = dofManager;
441 Teuchos::RCP<panzer::BlockedEpetraLinearObjFactory<panzer::Traits,int> > bloLinObjFactory
443 Teuchos::rcp_dynamic_cast<panzer::BlockedDOFManager>(dofManager)));
446 const std::string excludedBlocks = assembly_params.get<std::string>(
"Excluded Blocks");
447 std::vector<std::string> stringPairs;
449 for(std::size_t i=0;i<stringPairs.size();i++) {
450 std::vector<std::string> sPair;
451 std::vector<int> iPair;
455 TEUCHOS_TEST_FOR_EXCEPTION(iPair.size()!=2,std::logic_error,
456 "Input Error: The correct format for \"Excluded Blocks\" parameter in \"Assembly\" sub list is:\n" 457 " <int>,<int>; <int>,<int>; ...; <int>,<int>\n" 458 "Failure on string pair " << stringPairs[i] <<
"!");
460 bloLinObjFactory->addExcludedPair(iPair[0],iPair[1]);
463 linObjFactory = bloLinObjFactory;
471 blockedAssembly =
true;
473 TEUCHOS_ASSERT(!use_dofmanager_fei);
477 Teuchos::RCP<panzer::GlobalIndexer> dofManager
478 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,field_order);
479 globalIndexer = dofManager;
481 Teuchos::RCP<panzer::BlockedTpetraLinearObjFactory<panzer::Traits,double,int,panzer::GlobalOrdinal> > bloLinObjFactory
483 Teuchos::rcp_dynamic_cast<panzer::BlockedDOFManager>(dofManager)));
486 const std::string excludedBlocks = assembly_params.get<std::string>(
"Excluded Blocks");
487 std::vector<std::string> stringPairs;
489 for(std::size_t i=0;i<stringPairs.size();i++) {
490 std::vector<std::string> sPair;
491 std::vector<int> iPair;
495 TEUCHOS_TEST_FOR_EXCEPTION(iPair.size()!=2,std::logic_error,
496 "Input Error: The correct format for \"Excluded Blocks\" parameter in \"Assembly\" sub list is:\n" 497 " <int>,<int>; <int>,<int>; ...; <int>,<int>\n" 498 "Failure on string pair " << stringPairs[i] <<
"!");
500 bloLinObjFactory->addExcludedPair(iPair[0],iPair[1]);
503 linObjFactory = bloLinObjFactory;
511 TEUCHOS_ASSERT(!use_dofmanager_fei);
515 Teuchos::RCP<panzer::GlobalIndexer> dofManager
516 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,field_order);
517 globalIndexer = dofManager;
519 TEUCHOS_ASSERT(!useDiscreteAdjoint);
526 const bool has_interface_condition = hasInterfaceCondition(bcs);
527 if (has_interface_condition)
528 buildInterfaceConnections(bcs, conn_manager);
535 Teuchos::RCP<panzer::GlobalIndexer> dofManager
536 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,
538 globalIndexer = dofManager;
540 if (has_interface_condition)
541 checkInterfaceConnections(conn_manager, dofManager->getComm());
549 TEUCHOS_ASSERT(globalIndexer!=Teuchos::null);
550 TEUCHOS_ASSERT(linObjFactory!=Teuchos::null);
551 m_global_indexer = globalIndexer;
552 m_lin_obj_factory = linObjFactory;
553 m_blockedAssembly = blockedAssembly;
556 fout <<
"Degree of freedom load balancing: " << loadBalanceString << std::endl;
562 std::map<std::string,panzer::WorksetNeeds> needs;
563 for(std::size_t i=0;i<physicsBlocks.size();i++)
564 needs[physicsBlocks[i]->elementBlockID()] = physicsBlocks[i]->getWorksetNeeds();
566 Teuchos::RCP<panzer::WorksetContainer> wkstContainer
569 wkstContainer->setWorksetSize(workset_size);
570 wkstContainer->setGlobalIndexer(globalIndexer);
572 m_wkstContainer = wkstContainer;
575 std::size_t max_wksets = 0;
576 for(std::size_t pb=0;pb<physicsBlocks.size();pb++) {
578 Teuchos::RCP< std::vector<panzer::Workset> >works = wkstContainer->getWorksets(wd);
579 max_wksets = std::max(max_wksets,works->size());
581 user_data_params.set<std::size_t>(
"Max Worksets",max_wksets);
582 wkstContainer->clear();
589 useDynamicCoordinates_ =
false;
590 for(std::size_t pb=0;pb<physicsBlocks.size();pb++) {
591 if(physicsBlocks[pb]->getCoordinateDOFs().size()>0) {
592 mesh->setUseFieldCoordinates(
true);
593 useDynamicCoordinates_ =
true;
594 wkstContainer->clear();
603 panzer_data_params.set(
"STK Mesh", mesh);
604 panzer_data_params.set(
"DOF Manager", globalIndexer);
605 panzer_data_params.set(
"Linear Object Factory", linObjFactory);
610 if(!meConstructionOn)
616 std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > p_names;
617 std::vector<Teuchos::RCP<Teuchos::Array<double> > > p_values;
618 if (p.isSublist(
"Active Parameters")) {
619 Teuchos::ParameterList& active_params = p.sublist(
"Active Parameters");
621 int num_param_vecs = active_params.get<
int>(
"Number of Parameter Vectors",0);
622 p_names.resize(num_param_vecs);
623 p_values.resize(num_param_vecs);
624 for (
int i=0; i<num_param_vecs; i++) {
625 std::stringstream ss;
626 ss <<
"Parameter Vector " << i;
627 Teuchos::ParameterList& pList = active_params.sublist(ss.str());
628 int numParameters = pList.get<
int>(
"Number");
629 TEUCHOS_TEST_FOR_EXCEPTION(numParameters == 0,
630 Teuchos::Exceptions::InvalidParameter,
631 std::endl <<
"Error! panzer::ModelEvaluator::ModelEvaluator(): " <<
632 "Parameter vector " << i <<
" has zero parameters!" << std::endl);
634 Teuchos::rcp(
new Teuchos::Array<std::string>(numParameters));
636 Teuchos::rcp(
new Teuchos::Array<double>(numParameters));
637 for (
int j=0; j<numParameters; j++) {
638 std::stringstream ss2;
639 ss2 <<
"Parameter " << j;
640 (*p_names[i])[j] = pList.get<std::string>(ss2.str());
643 ss2 <<
"Initial Value " << j;
644 (*p_values[i])[j] = pList.get<
double>(ss2.str());
657 cm_factory.buildObjects(io_cm_builder);
662 Teuchos::RCP<panzer::FieldManagerBuilder> fmb;
664 bool write_dot_files = p.sublist(
"Options").get(
"Write Volume Assembly Graphs",
false);
665 std::string dot_file_prefix = p.sublist(
"Options").get(
"Volume Assembly Graph Prefix",
"Panzer_AssemblyGraph");
666 bool write_fm_files = p.sublist(
"Options").get(
"Write Field Manager Files",
false);
667 std::string fm_file_prefix = p.sublist(
"Options").get(
"Field Manager File Prefix",
"Panzer_AssemblyGraph");
671 auto check_write_dag = std::getenv(
"PANZER_WRITE_DAG");
672 if (check_write_dag !=
nullptr) {
673 write_dot_files =
true;
674 write_fm_files =
true;
678 fmb = buildFieldManagerBuilder(wkstContainer,physicsBlocks,bcs,*eqset_factory,bc_factory,cm_factory,
679 user_cm_factory,p.sublist(
"Closure Models"),*linObjFactory,user_data_params,
680 write_dot_files,dot_file_prefix,
681 write_fm_files,fm_file_prefix);
690 bool write_dot_files =
false;
691 std::string prefix =
"Panzer_ResponseGraph_";
692 write_dot_files = p.sublist(
"Options").get(
"Write Volume Response Graphs",write_dot_files);
693 prefix = p.sublist(
"Options").get(
"Volume Response Graph Prefix",prefix);
695 Teuchos::ParameterList user_data(p.sublist(
"User Data"));
696 user_data.set<
int>(
"Workset Size",workset_size);
702 Teuchos::RCP<Thyra::LinearOpWithSolveFactoryBase<double> > lowsFactory =
710 t_init = this->getInitialTime(p.sublist(
"Initial Conditions").sublist(
"Transient Parameters"), *mesh);
712 if(blockedAssembly || useTpetra)
715 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me
716 = buildPhysicsModelEvaluator(useThyraME,
733 const Teuchos::ParameterList& models = p.sublist(
"Closure Models");
734 Teuchos::ParameterList cl_models(models.name());
735 for (Teuchos::ParameterList::ConstIterator model_it=models.begin();
736 model_it!=models.end(); ++model_it) {
737 std::string key = model_it->first;
738 if (model_it->first !=
"Global MMS Parameters")
739 cl_models.setEntry(key,model_it->second);
741 bool write_dot_files =
false;
742 std::string prefix =
"Panzer_AssemblyGraph_";
743 setupInitialConditions(*thyra_me,*wkstContainer,physicsBlocks,user_cm_factory,*linObjFactory,
745 p.sublist(
"Initial Conditions"),
746 p.sublist(
"User Data"),
747 p.sublist(
"Options").get(
"Write Volume Assembly Graphs",write_dot_files),
748 p.sublist(
"Options").get(
"Volume Assembly Graph Prefix",prefix));
753 writeInitialConditions(*thyra_me,physicsBlocks,wkstContainer,globalIndexer,linObjFactory,mesh,user_cm_factory,
754 p.sublist(
"Closure Models"),
755 p.sublist(
"User Data"),workset_size);
757 m_physics_me = thyra_me;
760 template<
typename ScalarT>
765 const Teuchos::ParameterList & cellAvgQuants = output_list.sublist(
"Cell Average Quantities");
766 for(Teuchos::ParameterList::ConstIterator itr=cellAvgQuants.begin();
767 itr!=cellAvgQuants.end();++itr) {
768 const std::string & blockId = itr->first;
769 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
770 std::vector<std::string> tokens;
775 for(std::size_t i=0;i<tokens.size();i++)
782 const Teuchos::ParameterList & cellAvgVectors = output_list.sublist(
"Cell Average Vectors");
783 for(Teuchos::ParameterList::ConstIterator itr = cellAvgVectors.begin();
784 itr != cellAvgVectors.end(); ++itr) {
785 const std::string & blockId = itr->first;
786 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
787 std::vector<std::string> tokens;
792 for(std::size_t i = 0; i < tokens.size(); i++) {
793 std::string d_mod[3] = {
"X",
"Y",
"Z"};
800 const Teuchos::ParameterList & cellQuants = output_list.sublist(
"Cell Quantities");
801 for(Teuchos::ParameterList::ConstIterator itr=cellQuants.begin();
802 itr!=cellQuants.end();++itr) {
803 const std::string & blockId = itr->first;
804 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
805 std::vector<std::string> tokens;
810 for(std::size_t i=0;i<tokens.size();i++)
815 const Teuchos::ParameterList & nodalQuants = output_list.sublist(
"Nodal Quantities");
816 for(Teuchos::ParameterList::ConstIterator itr=nodalQuants.begin();
817 itr!=nodalQuants.end();++itr) {
818 const std::string & blockId = itr->first;
819 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
820 std::vector<std::string> tokens;
825 for(std::size_t i=0;i<tokens.size();i++)
829 const Teuchos::ParameterList & allocNodalQuants = output_list.sublist(
"Allocate Nodal Quantities");
830 for(Teuchos::ParameterList::ConstIterator itr=allocNodalQuants.begin();
831 itr!=allocNodalQuants.end();++itr) {
832 const std::string & blockId = itr->first;
833 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
834 std::vector<std::string> tokens;
839 for(std::size_t i=0;i<tokens.size();i++)
844 template<
typename ScalarT>
848 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
851 const Teuchos::ParameterList & closure_pl,
852 const Teuchos::ParameterList & initial_cond_pl,
853 const Teuchos::ParameterList & user_data_pl,
854 bool write_dot_files,
const std::string & dot_file_prefix)
const 858 Thyra::ModelEvaluatorBase::InArgs<double> nomValues = model.getNominalValues();
861 if(initial_cond_pl.get<
bool>(
"Zero Initial Conditions")) {
863 Thyra::assign(x_vec.ptr(),0.0);
865 else if(!initial_cond_pl.sublist(
"Vector File").get<
bool>(
"Enabled")) {
868 std::map<std::string, Teuchos::RCP< PHX::FieldManager<panzer::Traits> > > phx_ic_field_managers;
879 phx_ic_field_managers);
900 const std::string & vectorFile = initial_cond_pl.sublist(
"Vector File").get<std::string>(
"File Name");
901 TEUCHOS_TEST_FOR_EXCEPTION(vectorFile==
"",std::runtime_error,
902 "If \"Read From Vector File\" is true, then parameter \"Vector File\" cannot be the empty string.");
914 template<
typename ScalarT>
917 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
918 const Teuchos::RCP<panzer::WorksetContainer> & wc,
919 const Teuchos::RCP<const panzer::GlobalIndexer> & ugi,
921 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh,
923 const Teuchos::ParameterList & closure_model_pl,
924 const Teuchos::ParameterList & user_data_pl,
925 int workset_size)
const 927 Teuchos::RCP<panzer::LinearObjContainer> loc = lof->buildLinearObjContainer();
931 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > solnWriter
932 = initializeSolnWriterResponseLibrary(wc,ugi,lof,mesh);
935 Teuchos::ParameterList user_data(user_data_pl);
936 user_data.set<
int>(
"Workset Size",workset_size);
938 finalizeSolnWriterResponseLibrary(*solnWriter,physicsBlocks,cm_factory,closure_model_pl,workset_size,user_data);
945 ae_inargs.
alpha = 0.0;
946 ae_inargs.
beta = 1.0;
961 template<
typename ScalarT>
964 Teuchos::RCP<panzer_stk::STK_MeshFactory> mesh_factory;
967 if (mesh_params.get<std::string>(
"Source") ==
"Exodus File") {
968 mesh_factory = Teuchos::rcp(
new panzer_stk::STK_ExodusReaderFactory());
969 mesh_factory->setParameterList(Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Exodus File"))));
971 else if (mesh_params.get<std::string>(
"Source") ==
"Pamgen Mesh") {
972 mesh_factory = Teuchos::rcp(
new panzer_stk::STK_ExodusReaderFactory());
973 Teuchos::RCP<Teuchos::ParameterList> pamgenList = Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Pamgen Mesh")));
974 pamgenList->set(
"File Type",
"Pamgen");
975 mesh_factory->setParameterList(pamgenList);
977 else if (mesh_params.get<std::string>(
"Source") ==
"Inline Mesh") {
979 int dimension = mesh_params.sublist(
"Inline Mesh").get<
int>(
"Mesh Dimension");
980 std::string typeStr =
"";
981 if(mesh_params.sublist(
"Inline Mesh").isParameter(
"Type"))
982 typeStr = mesh_params.sublist(
"Inline Mesh").get<std::string>(
"Type");
984 if (dimension == 1) {
986 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
987 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
988 mesh_factory->setParameterList(in_mesh);
990 else if (dimension == 2 && typeStr==
"Tri") {
992 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
993 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
994 mesh_factory->setParameterList(in_mesh);
996 else if (dimension == 2) {
998 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
999 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1000 mesh_factory->setParameterList(in_mesh);
1002 else if (dimension == 3 && typeStr==
"Tet") {
1004 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1005 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1006 mesh_factory->setParameterList(in_mesh);
1008 else if(dimension == 3) {
1010 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1011 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1012 mesh_factory->setParameterList(in_mesh);
1014 else if(dimension==4) {
1016 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1017 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1018 mesh_factory->setParameterList(in_mesh);
1021 else if (mesh_params.get<std::string>(
"Source") ==
"Custom Mesh") {
1023 mesh_factory->setParameterList(Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Custom Mesh"))));
1031 if(mesh_params.isSublist(
"Rebalance")) {
1032 const Teuchos::ParameterList & rebalance = mesh_params.sublist(
"Rebalance");
1035 bool enabled =
false;
1036 if(rebalance.isType<
bool>(
"Enabled"))
1037 enabled = rebalance.get<
bool>(
"Enabled");
1040 Teuchos::RCP<Teuchos::ParameterList> rebalanceCycles;
1041 if(enabled && rebalance.isSublist(
"Cycles"))
1042 rebalanceCycles = Teuchos::rcp(
new Teuchos::ParameterList(rebalance.sublist(
"Cycles")));
1045 mesh_factory->enableRebalance(enabled,rebalanceCycles);
1048 return mesh_factory;
1051 template<
typename ScalarT>
1053 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> > & physicsBlocks,
1059 std::vector<Teuchos::RCP<panzer::PhysicsBlock> >::const_iterator physIter;
1060 for(physIter=physicsBlocks.begin();physIter!=physicsBlocks.end();++physIter) {
1062 double blockWeight = 0.0;
1064 Teuchos::RCP<const panzer::PhysicsBlock> pb = *physIter;
1065 const std::vector<panzer::StrPureBasisPair> & blockFields = pb->getProvidedDOFs();
1066 const std::vector<std::vector<std::string> > & coordinateDOFs = pb->getCoordinateDOFs();
1070 std::set<panzer::StrPureBasisPair,panzer::StrPureBasisComp> fieldNames;
1071 fieldNames.insert(blockFields.begin(),blockFields.end());
1076 std::set<std::string> fields_to_remove;
1080 for(std::size_t i=0;i<coordinateDOFs.size();i++) {
1082 for(std::size_t j=0;j<coordinateDOFs[i].size();j++)
1083 fields_to_remove.insert(coordinateDOFs[i][j]);
1087 std::set<std::string>::const_iterator rmItr;
1088 for (rmItr=fields_to_remove.begin();rmItr!=fields_to_remove.end();++rmItr)
1093 std::set<panzer::StrPureBasisPair,panzer::StrPureBasisComp>::const_iterator fieldItr;
1094 for (fieldItr=fieldNames.begin();fieldItr!=fieldNames.end();++fieldItr) {
1096 if(fieldItr->second->isScalarBasis() &&
1098 mesh.
addCellField(fieldItr->first,pb->elementBlockID());
1100 else if(fieldItr->second->isScalarBasis()) {
1103 else if(fieldItr->second->isVectorBasis()) {
1104 std::string d_mod[3] = {
"X",
"Y",
"Z"};
1105 for(
int d=0;d<fieldItr->second->dimension();d++)
1106 mesh.
addCellField(fieldItr->first+d_mod[d],pb->elementBlockID());
1108 else { TEUCHOS_ASSERT(
false); }
1110 blockWeight += double(fieldItr->second->cardinality());
1123 template<
typename ScalarT>
1126 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(m_physics_me), std::runtime_error,
1127 "Objects are not built yet! Please call buildObjects() member function.");
1128 return m_physics_me;
1131 template<
typename ScalarT>
1134 m_nox_observer_factory = nox_observer_factory;
1137 template<
typename ScalarT>
1140 m_rythmos_observer_factory = rythmos_observer_factory;
1143 template<
typename ScalarT>
1146 m_user_wkst_factory = user_wkst_factory;
1149 template<
typename ScalarT>
1152 if(m_rome_me==Teuchos::null)
1153 m_rome_me = buildResponseOnlyModelEvaluator(m_physics_me,m_global_data);
1158 template<
typename ScalarT>
1161 const Teuchos::RCP<panzer::GlobalData>& global_data,
1163 const Teuchos::Ptr<const panzer_stk::NOXObserverFactory> & in_nox_observer_factory,
1164 const Teuchos::Ptr<const panzer_stk::RythmosObserverFactory> & in_rythmos_observer_factory
1167 using Teuchos::is_null;
1170 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_lin_obj_factory), std::runtime_error,
1171 "Objects are not built yet! Please call buildObjects() member function.");
1172 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_global_indexer), std::runtime_error,
1173 "Objects are not built yet! Please call buildObjects() member function.");
1174 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_mesh), std::runtime_error,
1175 "Objects are not built yet! Please call buildObjects() member function.");
1176 Teuchos::Ptr<const panzer_stk::NOXObserverFactory> nox_observer_factory
1177 = is_null(in_nox_observer_factory) ? m_nox_observer_factory.ptr() : in_nox_observer_factory;
1178 Teuchos::Ptr<const panzer_stk::RythmosObserverFactory> rythmos_observer_factory
1179 = is_null(in_rythmos_observer_factory) ? m_rythmos_observer_factory.ptr() : in_rythmos_observer_factory;
1181 Teuchos::ParameterList& p = *this->getNonconstParameterList();
1182 Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
1183 Teuchos::RCP<Teuchos::ParameterList> piro_params = Teuchos::rcp(
new Teuchos::ParameterList(solncntl_params));
1184 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > piro;
1186 std::string solver = solncntl_params.get<std::string>(
"Piro Solver");
1187 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me_db
1188 = Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me);
1189 if ( (solver==
"NOX") || (solver ==
"LOCA") ) {
1191 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(nox_observer_factory), std::runtime_error,
1192 "No NOX obersver built! Please call setNOXObserverFactory() member function if you plan to use a NOX solver.");
1194 Teuchos::RCP<NOX::Abstract::PrePostOperator> ppo = nox_observer_factory->buildNOXObserver(m_mesh,m_global_indexer,m_lin_obj_factory);
1195 piro_params->sublist(
"NOX").sublist(
"Solver Options").set(
"User Defined Pre/Post Operator", ppo);
1198 piro = Teuchos::rcp(
new Piro::NOXSolver<double>(piro_params,
1199 Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me_db)));
1200 else if (solver ==
"LOCA")
1201 piro = Teuchos::rcp(
new Piro::LOCASolver<double>(piro_params,
1202 Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me_db),
1204 TEUCHOS_ASSERT(nonnull(piro));
1207 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Output Stream",global_data->os);
1208 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Error Stream",global_data->os);
1209 piro_params->sublist(
"NOX").sublist(
"Printing").set<
int>(
"Output Processor",global_data->os->getOutputToRootOnly());
1211 else if (solver==
"Rythmos") {
1213 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(rythmos_observer_factory), std::runtime_error,
1214 "No NOX obersver built! Please call setrythmosObserverFactory() member function if you plan to use a Rythmos solver.");
1217 if(rythmos_observer_factory->useNOXObserver()) {
1218 Teuchos::RCP<NOX::Abstract::PrePostOperator> ppo = nox_observer_factory->buildNOXObserver(m_mesh,m_global_indexer,m_lin_obj_factory);
1219 piro_params->sublist(
"NOX").sublist(
"Solver Options").set(
"User Defined Pre/Post Operator", ppo);
1223 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Output Stream",global_data->os);
1224 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Error Stream",global_data->os);
1225 piro_params->sublist(
"NOX").sublist(
"Printing").set<
int>(
"Output Processor",global_data->os->getOutputToRootOnly());
1228 Teuchos::RCP<Piro::RythmosSolver<double> > piro_rythmos;
1229 if(rythmosSolver==Teuchos::null)
1232 piro_rythmos = rythmosSolver;
1235 Teuchos::RCP<Thyra::ModelEvaluator<ScalarT> > rythmos_me = thyra_me;
1236 const std::string stepper_type = piro_params->sublist(
"Rythmos").get<std::string>(
"Stepper Type");
1237 if(stepper_type==
"Explicit RK" || stepper_type==
"Forward Euler") {
1238 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1239 bool lumpExplicitMass = assembly_params.get<
bool>(
"Lump Explicit Mass");
1243 piro_rythmos->initialize(piro_params, rythmos_me, rythmos_observer_factory->buildRythmosObserver(m_mesh,m_global_indexer,m_lin_obj_factory));
1245 piro = piro_rythmos;
1248 TEUCHOS_TEST_FOR_EXCEPTION(
true, std::logic_error,
1249 "Error: Unknown Piro Solver : " << solver);
1254 template<
typename ScalarT>
1257 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(m_response_library), std::runtime_error,
1258 "Objects are not built yet! Please call buildObjects() member function.");
1260 return m_response_library;
1263 template<
typename ScalarT>
1266 TEUCHOS_TEST_FOR_EXCEPTION(m_physics_blocks.size()==0, std::runtime_error,
1267 "Objects are not built yet! Please call buildObjects() member function.");
1269 return m_physics_blocks;
1272 template<
typename ScalarT>
1273 Teuchos::RCP<panzer::FieldManagerBuilder>
1276 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
1277 const std::vector<panzer::BC> & bcs,
1282 const Teuchos::ParameterList& closure_models,
1284 const Teuchos::ParameterList& user_data,
1285 bool writeGraph,
const std::string & graphPrefix,
1286 bool write_field_managers,
const std::string & field_manager_prefix)
const 1289 fmb->setWorksetContainer(wc);
1290 fmb->setupVolumeFieldManagers(physicsBlocks,volume_cm_factory,closure_models,lo_factory,user_data);
1291 fmb->setupBCFieldManagers(bcs,physicsBlocks,eqset_factory,bc_cm_factory,bc_factory,closure_models,lo_factory,user_data);
1295 fmb->writeVolumeGraphvizDependencyFiles(graphPrefix, physicsBlocks);
1296 fmb->writeBCGraphvizDependencyFiles(graphPrefix);
1298 if (write_field_managers){
1299 fmb->writeVolumeTextDependencyFiles(graphPrefix, physicsBlocks);
1300 fmb->writeBCTextDependencyFiles(field_manager_prefix);
1306 template<
typename ScalarT>
1307 Teuchos::RCP<Thyra::ModelEvaluator<double> >
1310 const Teuchos::RCP<Teuchos::ParameterList> & physics_block_plist,
1311 const Teuchos::RCP<const panzer::EquationSetFactory>& eqset_factory,
1314 bool is_transient,
bool is_explicit,
1315 const Teuchos::Ptr<const Teuchos::ParameterList> & bc_list,
1320 Teuchos::RCP<Thyra::ModelEvaluator<ScalarT> > physics_me = physics_me_in==Teuchos::null ? m_physics_me : physics_me_in;
1322 const Teuchos::ParameterList& p = *this->getParameterList();
1325 std::vector<Teuchos::RCP<panzer::PhysicsBlock> > physicsBlocks;
1327 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1330 std::map<std::string,std::string> block_ids_to_physics_ids;
1334 std::map<std::string,Teuchos::RCP<const shards::CellTopology> > block_ids_to_cell_topo;
1335 for(std::map<std::string,std::string>::const_iterator itr=block_ids_to_physics_ids.begin();
1336 itr!=block_ids_to_physics_ids.end();++itr) {
1337 block_ids_to_cell_topo[itr->first] = m_mesh->getCellTopology(itr->first);
1338 TEUCHOS_ASSERT(block_ids_to_cell_topo[itr->first]!=Teuchos::null);
1341 std::size_t workset_size = Teuchos::as<std::size_t>(assembly_params.get<
int>(
"Workset Size"));
1343 panzer::buildPhysicsBlocks(block_ids_to_physics_ids,
1344 block_ids_to_cell_topo,
1345 physics_block_plist,
1346 assembly_params.get<
int>(
"Default Integration Order"),
1355 Teuchos::RCP<panzer::FieldManagerBuilder> fmb;
1357 const Teuchos::ParameterList & user_data_params = p.sublist(
"User Data");
1359 bool write_dot_files =
false;
1360 std::string prefix =
"Cloned_";
1362 std::vector<panzer::BC> bcs;
1363 if(bc_list==Teuchos::null) {
1364 panzer::buildBCs(bcs, p.sublist(
"Boundary Conditions"), m_global_data);
1367 panzer::buildBCs(bcs, *bc_list, m_global_data);
1370 fmb = buildFieldManagerBuilder(
1380 p.sublist(
"Closure Models"),
1383 write_dot_files,prefix,
1384 write_dot_files,prefix);
1387 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > response_library
1390 m_lin_obj_factory));
1398 Thyra::ModelEvaluatorBase::InArgs<ScalarT> nomVals = physics_me->getNominalValues();
1401 Teuchos::RCP<Thyra::EpetraModelEvaluator> ep_thyra_me = Teuchos::rcp_dynamic_cast<Thyra::EpetraModelEvaluator>(physics_me);
1402 Teuchos::RCP<PanzerME> panzer_me = Teuchos::rcp_dynamic_cast<PanzerME>(physics_me);
1403 bool useThyra =
true;
1404 if(ep_thyra_me!=Teuchos::null)
1408 std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > p_names(physics_me->Np());
1409 std::vector<Teuchos::RCP<Teuchos::Array<double> > > p_values(physics_me->Np());
1410 for(std::size_t i=0;i<p_names.size();i++) {
1411 p_names[i] = Teuchos::rcp(
new Teuchos::Array<std::string>(*physics_me->get_p_names(i)));
1412 p_values[i] = Teuchos::rcp(
new Teuchos::Array<double>(p_names[i]->size(),0.0));
1415 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me
1416 = buildPhysicsModelEvaluator(useThyra,
1428 thyra_me->getNominalValues() = nomVals;
1432 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1433 bool lumpExplicitMass = assembly_params.get<
bool>(
"Lump Explicit Mass");
1441 template<
typename ScalarT>
1442 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> >
1445 const Teuchos::RCP<panzer::FieldManagerBuilder> & fmb,
1448 const std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > & p_names,
1449 const std::vector<Teuchos::RCP<Teuchos::Array<double> > > & p_values,
1451 const Teuchos::RCP<panzer::GlobalData> & global_data,
1452 bool is_transient,
double t_init)
const 1454 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me;
1456 Teuchos::RCP<panzer::ModelEvaluator_Epetra> ep_me
1460 ep_me->set_t_init(t_init);
1463 thyra_me = Thyra::epetraModelEvaluator(ep_me,solverFactory);
1467 (fmb,rLibrary,lof,p_names,p_values,solverFactory,global_data,is_transient,t_init));
1473 template<
typename ScalarT>
1478 Teuchos::ParameterList validPL;
1480 Teuchos::setStringToIntegralParameter<int>(
1483 "Set the start time",
1484 Teuchos::tuple<std::string>(
"From Input File",
"From Exodus File"),
1488 validPL.set<
double>(
"Start Time",0.0);
1491 p.validateParametersAndSetDefaults(validPL);
1493 std::string t_init_type = p.get<std::string>(
"Start Time Type");
1494 double t_init = 10.0;
1496 if (t_init_type ==
"From Input File")
1497 t_init = p.get<
double>(
"Start Time");
1499 if (t_init_type ==
"From Exodus File")
1507 template<
typename ScalarT>
1510 const Teuchos::RCP<const panzer::GlobalIndexer> & ugi,
1512 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh)
const 1514 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > stkIOResponseLibrary
1517 std::vector<std::string> eBlocks;
1518 mesh->getElementBlockNames(eBlocks);
1521 builder.
mesh = mesh;
1522 stkIOResponseLibrary->addResponse(
"Main Field Output",eBlocks,builder);
1524 return stkIOResponseLibrary;
1527 template<
typename ScalarT>
1530 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> > & physicsBlocks,
1532 const Teuchos::ParameterList & closure_models,
1533 int workset_size, Teuchos::ParameterList & user_data)
const 1535 user_data.set<
int>(
"Workset Size",workset_size);
1539 template<
typename ScalarT>
1542 const Teuchos::RCP<const panzer::GlobalIndexer> & globalIndexer,
1543 const Teuchos::RCP<panzer::ConnManager> & conn_manager,
1544 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh,
1546 #ifdef PANZER_HAVE_TEKO
1547 ,
const Teuchos::RCP<Teko::RequestHandler> & reqHandler
1551 const Teuchos::ParameterList & p = *this->getParameterList();
1552 const Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
1555 Teuchos::RCP<Teuchos::ParameterList> strat_params
1556 = Teuchos::rcp(
new Teuchos::ParameterList(solncntl_params.sublist(
"NOX").sublist(
"Direction").
1557 sublist(
"Newton").sublist(
"Stratimikos Linear Solver").sublist(
"Stratimikos")));
1559 bool writeCoordinates =
false;
1560 if(p.sublist(
"Options").isType<
bool>(
"Write Coordinates"))
1561 writeCoordinates = p.sublist(
"Options").get<
bool>(
"Write Coordinates");
1563 bool writeTopo =
false;
1564 if(p.sublist(
"Options").isType<
bool>(
"Write Topology"))
1565 writeTopo = p.sublist(
"Options").get<
bool>(
"Write Topology");
1569 blockedAssembly,globalIndexer,conn_manager,
1570 Teuchos::as<int>(mesh->getDimension()), mpi_comm, strat_params,
1571 #ifdef PANZER_HAVE_TEKO
1579 template<
typename ScalarT>
1582 const bool write_graphviz_file,
1583 const std::string& graphviz_file_prefix)
1587 Teuchos::ParameterList & p = *this->getNonconstParameterList();
1588 Teuchos::ParameterList & user_data = p.sublist(
"User Data");
1589 Teuchos::ParameterList & closure_models = p.sublist(
"Closure Models");
1592 Teuchos::RCP<Thyra::EpetraModelEvaluator> thyra_me = Teuchos::rcp_dynamic_cast<Thyra::EpetraModelEvaluator>(m_physics_me);
1593 Teuchos::RCP<PanzerME> panzer_me = Teuchos::rcp_dynamic_cast<PanzerME>(m_physics_me);
1595 if(thyra_me!=Teuchos::null && panzer_me==Teuchos::null) {
1596 Teuchos::RCP<const EpetraExt::ModelEvaluator> const_ep_me;
1597 Teuchos::RCP<Thyra::LinearOpWithSolveFactoryBase<double> > solveFactory;
1598 thyra_me->uninitialize(&const_ep_me,&solveFactory);
1604 ep_panzer_me->
buildResponses(m_physics_blocks,*m_eqset_factory,cm_factory,closure_models,user_data,write_graphviz_file,graphviz_file_prefix);
1607 thyra_me->initialize(ep_me,solveFactory);
1611 else if(panzer_me!=Teuchos::null && thyra_me==Teuchos::null) {
1612 panzer_me->buildResponses(m_physics_blocks,*m_eqset_factory,cm_factory,closure_models,user_data,write_graphviz_file,graphviz_file_prefix);
1617 TEUCHOS_ASSERT(
false);
void TokensToInts(std::vector< int > &values, const std::vector< std::string > &tokens)
Turn a vector of tokens into a vector of ints.
void setRythmosObserverFactory(const Teuchos::RCP< const panzer_stk::RythmosObserverFactory > &rythmos_observer_factory)
Interface for constructing a BCStrategy_TemplateManager.
virtual void completeMeshConstruction(STK_Interface &mesh, stk::ParallelMachine parallelMach) const =0
Allocates and initializes an equation set template manager.
bool evaluate_transient_terms
void finalizeMeshConstruction(const STK_MeshFactory &mesh_factory, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::MpiComm< int > mpi_comm, STK_Interface &mesh) const
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > getPhysicsModelEvaluator()
Teuchos::RCP< Thyra::ModelEvaluator< double > > cloneWithNewPhysicsBlocks(const Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< ScalarT > > &solverFactory, const Teuchos::RCP< Teuchos::ParameterList > &physics_block_plist, const Teuchos::RCP< const panzer::EquationSetFactory > &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &user_cm_factory, bool is_transient, bool is_explicit, const Teuchos::Ptr< const Teuchos::ParameterList > &bc_list=Teuchos::null, const Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > &physics_me=Teuchos::null) const
void writeInitialConditions(const Thyra::ModelEvaluator< ScalarT > &model, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< panzer::WorksetContainer > &wc, const Teuchos::RCP< const panzer::GlobalIndexer > &ugi, const Teuchos::RCP< const panzer::LinearObjFactory< panzer::Traits > > &lof, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_model_pl, const Teuchos::ParameterList &user_data_pl, int workset_size) const
Write the initial conditions to exodus. Note that this is entirely self contained.
static bool requiresBlocking(const std::string &fieldorder)
void setUseTieBreak(bool flag)
virtual Teuchos::RCP< panzer::GlobalIndexer > buildGlobalIndexer(const Teuchos::RCP< const Teuchos::OpaqueWrapper< MPI_Comm > > &mpiComm, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< ConnManager > &connMngr, const std::string &fieldOrder="") const
void buildBlockIdToPhysicsIdMap(std::map< std::string, std::string > &b_to_p, const Teuchos::ParameterList &p)
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const
virtual void set_x_th(const Teuchos::RCP< Thyra::VectorBase< ScalarT > > &in)=0
void addSolutionField(const std::string &fieldName, const std::string &blockId)
void setParameterList(Teuchos::RCP< Teuchos::ParameterList > const ¶mList)
Teuchos::RCP< panzer::LinearObjContainer > ghostedContainer_
Teuchos::RCP< panzer_stk::STK_Interface > mesh
Class that provides access to worksets on each element block and side set.
Teuchos::RCP< panzer::LinearObjContainer > container_
Teuchos::RCP< panzer::FieldManagerBuilder > buildFieldManagerBuilder(const Teuchos::RCP< panzer::WorksetContainer > &wc, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const std::vector< panzer::BC > &bcs, const panzer::EquationSetFactory &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &volume_cm_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &bc_cm_factory, const Teuchos::ParameterList &closure_models, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const Teuchos::ParameterList &user_data, bool writeGraph, const std::string &graphPrefix, bool write_field_managers, const std::string &field_manager_prefix) const
unsigned getDimension() const
get the dimension
void buildResponseEvaluators(const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, const Teuchos::ParameterList &user_data, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > buildResponseOnlyModelEvaluator(const Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > &thyra_me, const Teuchos::RCP< panzer::GlobalData > &global_data, const Teuchos::RCP< Piro::RythmosSolver< ScalarT > > rythmosSolver=Teuchos::null, const Teuchos::Ptr< const panzer_stk::NOXObserverFactory > &in_nox_observer_factory=Teuchos::null, const Teuchos::Ptr< const panzer_stk::RythmosObserverFactory > &in_rythmos_observer_factory=Teuchos::null)
void buildResponses(const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::EquationSetFactory &eqset_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, const Teuchos::ParameterList &user_data, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
void addUserFieldsToMesh(panzer_stk::STK_Interface &mesh, const Teuchos::ParameterList &output_list) const
Add the user fields specified by output_list to the mesh.
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > getResponseOnlyModelEvaluator()
Teuchos::RCP< Thyra::ModelEvaluatorDefaultBase< double > > buildPhysicsModelEvaluator(bool buildThyraME, const Teuchos::RCP< panzer::FieldManagerBuilder > &fmb, const Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > &rLibrary, const Teuchos::RCP< panzer::LinearObjFactory< panzer::Traits > > &lof, const std::vector< Teuchos::RCP< Teuchos::Array< std::string > > > &p_names, const std::vector< Teuchos::RCP< Teuchos::Array< double > > > &p_values, const Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< ScalarT > > &solverFactory, const Teuchos::RCP< panzer::GlobalData > &global_data, bool is_transient, double t_init) const
void setUseNeighbors(bool flag)
void setNOXObserverFactory(const Teuchos::RCP< const panzer_stk::NOXObserverFactory > &nox_observer_factory)
Teuchos::RCP< STK_MeshFactory > buildSTKMeshFactory(const Teuchos::ParameterList &mesh_params) const
build STK mesh factory from a mesh parameter list
Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > buildLOWSFactory(bool blockedAssembly, const Teuchos::RCP< const panzer::GlobalIndexer > &globalIndexer, const Teuchos::RCP< panzer::ConnManager > &conn_manager, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm) const
void buildObjects(const Teuchos::RCP< const Teuchos::Comm< int > > &comm, const Teuchos::RCP< panzer::GlobalData > &global_data, const Teuchos::RCP< const panzer::EquationSetFactory > &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, bool meConstructionOn=true)
Builds the model evaluators for a panzer assembly.
virtual Teuchos::RCP< LinearObjContainer > buildLinearObjContainer() const =0
double getInitialStateTime() const
void setBlockWeight(const std::string &blockId, double weight)
void setupInitialConditions(Thyra::ModelEvaluator< ScalarT > &model, panzer::WorksetContainer &wkstContainer, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const panzer::LinearObjFactory< panzer::Traits > &lof, const Teuchos::ParameterList &closure_pl, const Teuchos::ParameterList &initial_cond_pl, const Teuchos::ParameterList &user_data_pl, bool write_dot_files, const std::string &dot_file_prefix) const
Setup the initial conditions in a model evaluator. Note that this is entirely self contained...
Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > buildLOWSFactory(bool blockedAssembly, const Teuchos::RCP< const panzer::GlobalIndexer > &globalIndexer, const Teuchos::RCP< panzer_stk::STKConnManager > &stkConn_manager, int spatialDim, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm, const Teuchos::RCP< Teuchos::ParameterList > &strat_params, bool writeCoordinates, bool writeTopo, const Teuchos::RCP< const panzer::GlobalIndexer > &auxGlobalIndexer, bool useCoordinates)
double getInitialTime(Teuchos::ParameterList &transient_ic_params, const panzer_stk::STK_Interface &mesh) const
Gets the initial time from either the input parameter list or an exodus file.
virtual void readVector(const std::string &identifier, LinearObjContainer &loc, int id) const =0
void addMeshCoordFields(const std::string &blockId, const std::vector< std::string > &coordField, const std::string &dispPrefix)
virtual Teuchos::RCP< panzer::GlobalIndexer > buildGlobalIndexer(const Teuchos::RCP< const Teuchos::OpaqueWrapper< MPI_Comm > > &mpiComm, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< ConnManager > &connMngr, const std::string &fieldOrder="") const
void setupInitialConditionFieldManagers(WorksetContainer &wkstContainer, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &ic_block_closure_models, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const Teuchos::ParameterList &user_data, const bool write_graphviz_file, const std::string &graphviz_file_prefix, std::map< std::string, Teuchos::RCP< PHX::FieldManager< panzer::Traits > > > &phx_ic_field_managers)
Builds PHX::FieldManager objects for inital conditions and registers evaluators.
void buildResponses(const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > & getPhysicsBlocks() const
void finalizeSolnWriterResponseLibrary(panzer::ResponseLibrary< panzer::Traits > &rl, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, int workset_size, Teuchos::ParameterList &user_data) const
std::pair< std::string, Teuchos::RCP< panzer::PureBasis > > StrPureBasisPair
Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > initializeSolnWriterResponseLibrary(const Teuchos::RCP< panzer::WorksetContainer > &wc, const Teuchos::RCP< const panzer::GlobalIndexer > &ugi, const Teuchos::RCP< const panzer::LinearObjFactory< panzer::Traits > > &lof, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh) const
WorksetDescriptor blockDescriptor(const std::string &eBlock)
void StringTokenizer(std::vector< std::string > &tokens, const std::string &str, const std::string delimiters, bool trim)
Tokenize a string, put tokens in a vector.
void setUseDOFManagerFEI(bool flag)
void addCellField(const std::string &fieldName, const std::string &blockId)
void evaluateInitialCondition(WorksetContainer &wkstContainer, const std::map< std::string, Teuchos::RCP< PHX::FieldManager< panzer::Traits > > > &phx_ic_field_managers, Teuchos::RCP< panzer::LinearObjContainer > loc, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const double time_stamp)
void registerScalarParameter(const std::string name, panzer::ParamLib &pl, double realValue)
void setUserWorksetFactory(Teuchos::RCP< panzer_stk::WorksetFactory > &user_wkst_factory)
Set user defined workset factory.
void setUseDOFManagerFEI(bool flag)
Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > getResponseLibrary()
std::string printUGILoadBalancingInformation(const GlobalIndexer &ugi)